PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003202.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 387aa    MW: 43624.8 Da    PI: 6.7857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003202.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
      Pbr003202.1 14 KGPWSPEEDARLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding36.31.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
      Pbr003202.1  69 GGFSEEEDNTICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.281966IPR017930Myb domain
SuperFamilySSF466892.09E-2611109IPR009057Homeodomain-like
SMARTSM007177.6E-131364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241569IPR009057Homeodomain-like
CDDcd001672.95E-91662No hitNo description
SMARTSM007171.5E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129416.33867117IPR017930Myb domain
PfamPF002491.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2370117IPR009057Homeodomain-like
CDDcd001672.96E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNTIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNINQSP SDQSQDHQLK DAGNTHALSS SALERLQLHM QLQSLQNPFS FYNNPALWPK  180
LHPLQEKMIQ TLRSMNDNNP MMHHRALTSP LQPAQEQKGN INDVHEQLQL TSASILIQQE  240
FAKLCNHKNM DELENPLNGM SYSDAPCRAF ISTSNQVDST IVAAKADGVE QLNSVGTHDH  300
HHQLNSGFQG EFGDVVNNKC FGLAAQQEDH QIAEFDCFKD INVSKDSLEW WANEFDAKSA  360
SSNSWDSISV LQSQGMFQDY ELGYNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348800.10.0PREDICTED: transcription factor RAX3-like
TrEMBLM5XIY10.0M5XIY1_PRUPE; Uncharacterized protein
STRINGPOPTR_0018s10390.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-97myb domain protein 36